Authors
Houriiyah Tegally # 1 2 , James E San 1 2 , Matthew Cotten 3 4 , Monika Moir 1 , Bryan Tegomoh 5 6 , Gerald Mboowa 7 , Darren P Martin 8 9 , Cheryl Baxter 1 10 , Arnold W Lambisia 11 , Amadou Diallo 12 , Daniel G Amoako 13 14 , Moussa M Diagne 12 , Abay Sisay 15 16 , Abdel-Rahman N Zekri 17 , Abdou Salam Gueye 18 , Abdoul K Sangare 19 , Abdoul-Salam Ouedraogo 20 , Abdourahmane Sow 21 , Abdualmoniem O Musa 22 23 24 , Abdul K Sesay 25 , Abe G Abias 26 , Adam I Elzagheid 27 , Adamou Lagare 28 , Adedotun-Sulaiman Kemi 29 , Aden Elmi Abar 30 , Adeniji A Johnson 31 32 , Adeola Fowotade 33 34 , Adeyemi O Oluwapelumi 35 36 , Adrienne A Amuri 37 38 , Agnes Juru 39 , Ahmed Kandeil 40 , Ahmed Mostafa 40 , Ahmed Rebai 41 , Ahmed Sayed 42 , Akano Kazeem 43 44 , Aladje Balde 45 46 , Alan Christoffels 7 47 , Alexander J Trotter 48 , Allan Campbell 49 , Alpha K Keita 50 51 , Amadou Kone 52 , Amal Bouzid 41 53 , Amal Souissi 41 , Ambrose Agweyu 11 , Amel Naguib 54 , Ana V Gutierrez 48 , Anatole Nkeshimana 55 , Andrew J Page 48 , Anges Yadouleton 56 , Anika Vinze 57 , Anise N Happi 43 , Anissa Chouikha 58 59 , Arash Iranzadeh 8 9 , Arisha Maharaj 1 , Armel L Batchi-Bouyou 60 61 , Arshad Ismail 13 , Augustina A Sylverken 62 63 , Augustine Goba 64 65 , Ayoade Femi 43 44 , Ayotunde E Sijuwola 43 , Baba Marycelin 66 67 , Babatunde L Salako 29 32 , Bamidele S Oderinde 66 , Bankole Bolajoko 43 , Bassirou Diarra 52 , Belinda L Herring 18 , Benjamin Tsofa 11 , Bernard Lekana-Douki 68 69 , Bernard Mvula 70 , Berthe-Marie Njanpop-Lafourcade 18 , Blessing T Marondera 71 , Bouh Abdi Khaireh 72 73 , Bourema Kouriba 19 , Bright Adu 74 , Brigitte Pool 75 , Bronwyn McInnis 17 , Cara Brook 76 77 , Carolyn Williamson 9 10 78 , Cassien Nduwimana 55 , Catherine Anscombe 79 80 , Catherine B Pratt 81 , Cathrine Scheepers 13 82 , Chantal G Akoua-Koffi 83 84 , Charles N Agoti 11 85 , Chastel M Mapanguy 60 86 , Cheikh Loucoubar 12 , Chika K Onwuamah 87 , Chikwe Ihekweazu 88 , Christian N Malaka 89 , Christophe Peyrefitte 12 , Chukwa Grace 43 44 , Chukwuma E Omoruyi 33 34 , Clotaire D Rafaï 90 , Collins M Morang'a 91 , Cyril Erameh 92 , Daniel B Lule 3 , Daniel J Bridges 93 , Daniel Mukadi-Bamuleka 37 , Danny Park 57 , David A Rasmussen 94 95 , David Baker 48 , David J Nokes 11 96 , Deogratius Ssemwanga 3 97 , Derek Tshiabuila 2 , Dominic S Y Amuzu 91 , Dominique Goedhals 98 , Donald S Grant 64 65 99 , Donwilliams O Omuoyo 11 , Dorcas Maruapula 100 , Dorcas W Wanjohi 7 , Ebenezer Foster-Nyarko 48 , Eddy K Lusamaki 37 38 51 , Edgar Simulundu 101 , Edidah M Ong'era 11 , Edith N Ngabana 37 38 , Edward O Abworo 102 , Edward Otieno 11 , Edwin Shumba 71 , Edwine Barasa 11 , El Bara Ahmed 103 104 , Elhadi A Ahmed 23 , Emmanuel Lokilo 37 , Enatha Mukantwari 105 , Eromon Philomena 43 , Essia Belarbi 106 , Etienne Simon-Loriere 107 , Etilé A Anoh 83 , Eusebio Manuel 108 , Fabian Leendertz 106 , Fahn M Taweh 109 , Fares Wasfi 58 , Fatma Abdelmoula 41 110 , Faustinos T Takawira 39 , Fawzi Derrar 111 , Fehintola V Ajogbasile 43 , Florette Treurnicht 112 113 , Folarin Onikepe 43 44 , Francine Ntoumi 60 114 , Francisca M Muyembe 37 38 , Frank E Z Ragomzingba 115 , Fred A Dratibi 116 18 , Fred-Akintunwa Iyanu 43 , Gabriel K Mbunsu 38 , Gaetan Thilliez 48 , Gemma L Kay 48 , George O Akpede 92 , Gert U van Zyl 117 118 , Gordon A Awandare 91 , Grace S Kpeli 119 120 , Grit Schubert 106 , Gugu P Maphalala 121 , Hafaliana C Ranaivoson 77 , Hannah E Omunakwe 122 , Harris Onywera 7 , Haruka Abe 123 , Hela Karray 124 , Hellen Nansumba 125 , Henda Triki 58 , Herve Albéric Adje Kadjo 126 , Hesham Elgahzaly 127 , Hlanai Gumbo 39 , Hota Mathieu 128 , Hugo Kavunga-Membo 37 , Ibtihel Smeti 41 , Idowu B Olawoye 43 , Ifedayo M O Adetifa 88 129 , Ikponmwosa Odia 92 , Ilhem Boutiba Ben Boubaker 130 131 , Iluoreh Ahmed Muhammad 43 , Isaac Ssewanyana 125 , Isatta Wurie 132 , Iyaloo S Konstantinus 133 , Jacqueline Wemboo Afiwa Halatoko 134 , James Ayei 26 , Janaki Sonoo 135 , Jean-Claude C Makangara 37 38 , Jean-Jacques M Tamfum 37 38 , Jean-Michel Heraud 12 77 , Jeffrey G Shaffer 136 , Jennifer Giandhari 2 , Jennifer Musyoki 11 , Jerome Nkurunziza 137 , Jessica N Uwanibe 43 , Jinal N Bhiman 13 113 , Jiro Yasuda 123 , Joana Morais 138 139 , Jocelyn Kiconco 97 , John D Sandi 64 65 , John Huddleston 140 , John K Odoom 74 , John M Morobe 11 , John O Gyapong 119 , John T Kayiwa 3 , Johnson C Okolie 43 , Joicymara S Xavier 1 141 142 , Jones Gyamfi 119 , Joseph F Wamala 143 , Joseph H K Bonney 74 , Joseph Nyandwi 55 144 , Josie Everatt 13 , Joweria Nakaseegu 97 , Joyce M Ngoi 91 , Joyce Namulondo 97 , Judith U Oguzie 43 44 , Julia C Andeko 68 , Julius J Lutwama 3 , Juma J H Mogga 143 , Justin O'Grady 48 , Katherine J Siddle 57 , Kathleen Victoir 145 , Kayode T Adeyemi 43 44 , Kefentse A Tumedi 146 , Kevin S Carvalho 147 , Khadija Said Mohammed 11 , Koussay Dellagi 145 , Kunda G Musonda 148 , Kwabena O Duedu 119 120 , Lamia Fki-Berrajah 124 , Lavanya Singh 2 , Lenora M Kepler 94 95 , Leon Biscornet 75 , Leonardo de Oliveira Martins 48 , Lucious Chabuka 149 , Luicer Olubayo 8 , Lul Deng Ojok 26 , Lul Lojok Deng 26 , Lynette I Ochola-Oyier 11 , Lynn Tyers 9 , Madisa Mine 150 , Magalutcheemee Ramuth 135 , Maha Mastouri 151 152 , Mahmoud ElHefnawi 153 , Maimouna Mbanne 12 , Maitshwarelo I Matsheka 146 , Malebogo Kebabonye 154 , Mamadou Diop 12 , Mambu Momoh 64 65 155 , Maria da Luz Lima Mendonça 147 , Marietjie Venter 156 , Marietou F Paye 57 , Martin Faye 12 , Martin M Nyaga 157 , Mathabo Mareka 158 , Matoke-Muhia Damaris 159 , Maureen W Mburu 11 , Maximillian G Mpina 160 161 162 , Michael Owusu 163 , Michael R Wiley 81 164 , Mirabeau Y Tatfeng 165 , Mitoha Ondo'o Ayekaba 161 , Mohamed Abouelhoda 166 167 , Mohamed Amine Beloufa 111 , Mohamed G Seadawy 168 169 , Mohamed K Khalifa 170 , Mooko Marethabile Matobo 158 , Mouhamed Kane 12 , Mounerou Salou 171 , Mphaphi B Mbulawa 154 , Mulenga Mwenda 93 , Mushal Allam 172 , My V T Phan 3 , Nabil Abid 151 173 , Nadine Rujeni 174 175 , Nadir Abuzaid 176 , Nalia Ismael 177 , Nancy Elguindy 54 , Ndeye Marieme Top 12 , Ndongo Dia 12 , Nédio Mabunda 177 , Nei-Yuan Hsiao 9 78 , Nelson Boricó Silochi 161 , Ngiambudulu M Francisco 138 , Ngonda Saasa 178 , Nicholas Bbosa 3 , Nickson Murunga 11 , Nicksy Gumede 18 , Nicole Wolter 13 113 , Nikita Sitharam 1 , Nnaemeka Ndodo 88 , Nnennaya A Ajayi 179 , Noël Tordo 180 , Nokuzola Mbhele 9 , Norosoa H Razanajatovo 77 , Nosamiefan Iguosadolo 43 , Nwando Mba 88 , Ojide C Kingsley 181 , Okogbenin Sylvanus 92 , Oladiji Femi 182 , Olubusuyi M Adewumi 31 32 , Olumade Testimony 43 44 , Olusola A Ogunsanya 43 , Oluwatosin Fakayode 183 , Onwe E Ogah 184 , Ope-Ewe Oludayo 43 , Ousmane Faye 12 , Pamela Smith-Lawrence 154 , Pascale Ondoa 71 , Patrice Combe 185 , Patricia Nabisubi 186 187 , Patrick Semanda 125 , Paul E Oluniyi 43 , Paulo Arnaldo 177 , Peter Kojo Quashie 91 , Peter O Okokhere 92 188 , Philip Bejon 11 , Philippe Dussart 77 , Phillip A Bester 189 , Placide K Mbala 37 38 , Pontiano Kaleebu 3 97 , Priscilla Abechi 43 44 , Rabeh El-Shesheny 40 190 , Rageema Joseph 9 , Ramy Karam Aziz 191 192 , René G Essomba 193 194 , Reuben Ayivor-Djanie 91 119 120 , Richard Njouom 195 , Richard O Phillips 63 , Richmond Gorman 63 , Robert A Kingsley 48 , Rosa Maria D E S A Neto Rodrigues 196 197 , Rosemary A Audu 29 , Rosina A A Carr 119 120 , Saba Gargouri 124 , Saber Masmoudi 41 , Sacha Bootsma 143 , Safietou Sankhe 12 , Sahra Isse Mohamed 198 , Saibu Femi 43 , Salma Mhalla 131 199 , Salome Hosch 160 200 , Samar Kamal Kassim 127 , Samar Metha 57 , Sameh Trabelsi 201 , Sara Hassan Agwa 127 , Sarah Wambui Mwangi 7 , Seydou Doumbia 52 , Sheila Makiala-Mandanda 37 38 , Sherihane Aryeetey 63 , Shymaa S Ahmed 54 , Side Mohamed Ahmed 103 , Siham Elhamoumi 57 , Sikhulile Moyo 100 202 , Silvia Lutucuta 138 , Simani Gaseitsiwe 100 202 , Simbirie Jalloh 64 65 , Soa Fy Andriamandimby 77 , Sobajo Oguntope 43 , Solène Grayo 180 , Sonia Lekana-Douki 68 , Sophie Prosolek 48 , Soumeya Ouangraoua 203 204 , Stephanie van Wyk 1 , Stephen F Schaffner 57 , Stephen Kanyerezi 186 187 , Steve Ahuka-Mundeke 37 38 , Steven Rudder 48 , Sureshnee Pillay 2 , Susan Nabadda 125 , Sylvie Behillil 205 , Sylvie L Budiaki 158 , Sylvie van der Werf 205 , Tapfumanei Mashe 39 206 , Thabo Mohale 13 , Thanh Le-Viet 48 , Thirumalaisamy P Velavan 114 207 , Tobias Schindler 160 161 200 , Tongai G Maponga 117 , Trevor Bedford 140 208 , Ugochukwu J Anyaneji 2 , Ugwu Chinedu 43 44 , Upasana Ramphal 2 10 209 , Uwem E George 43 , Vincent Enouf 205 , Vishvanath Nene 102 , Vivianne Gorova 210 211 , Wael H Roshdy 54 , Wasim Abdul Karim 1 , William K Ampofo 212 , Wolfgang Preiser 117 118 , Wonderful T Choga 100 213 , Yahaya Ali Ahmed 18 , Yajna Ramphal 1 , Yaw Bediako 91 214 , Yeshnee Naidoo 2 , Yvan Butera 174 215 216 , Zaydah R de Laurent 11 ; Africa Pathogen Genomics Initiative (Africa PGI)‡; Ahmed E O Ouma 7 , Anne von Gottberg 13 113 , George Githinji 11 217 , Matshidiso Moeti 18 , Oyewale Tomori 43 , Pardis C Sabeti 57 , Amadou A Sall 12 , Samuel O Oyola 102 , Yenew K Tebeje 7 , Sofonias K Tessema 7 , Tulio de Oliveira 1 2 10 218 , Christian Happi 43 44 , Richard Lessells 2 , John Nkengasong 7 , Eduan Wilkinson # 1 2

Journal : Science

DOI : 10.1126/science.abq5358.

PMCID : PMC9529057

PMID : 36108049

Authors
Seetswane E, Loeto D, Muzila M, Tshekiso K, Gomba A, Baruti K, Jongman M.

Journal : Microbiology (Reading)

DOI : 10.1099/mic.0.001213

PMID : 36287593

Authors
Capparelli EV, Ajibola G, Maswabi K, Holme MP, Bennett K, Powis KM, Moyo S, Mohammed T, Maphorisa C, Hughes MD, Seaton KE, Tomaras GD, Mosher S, Taylor A, O'Connell S, Narpala S, Mcdermott A, Caskey M, Gama L, Lockman S, Jean-Philippe P, Makhema J, Kuritzkes DR, Lichterfeld M, Shapiro RL; Tatelo Study Team.

Journal : J Acquir Immune Defic Syndr.

DOI : 10.1097/QAI.0000000000003033.

PMID : 36094485

Authors
Babalola CM, Siebert JC, Kallapur SG, Maecker HT, Rosenberg-Hasson Y, Hansman E, Wynn A, Mussa A, Ryan R, Simon S, Morroni C, Klausner JD.

Journal : J Infect Dis.

DOI : 10.1093/infdis/jiac302. PMID: 35876733

PMID : 35876733

Authors
Tegally H, Moir M, Everatt J, Giovanetti M, Scheepers C, Wilkinson E, Subramoney K, Makatini Z, Moyo S, Amoako DG, Baxter C, Althaus CL, Anyaneji UJ, Kekana D, Viana R, Giandhari J, Lessells RJ, Maponga T, Maruapula D, Choga W, Matshaba M, Mbulawa MB, Msomi N; NGS-SA consortium; Naidoo Y, Pillay S, Sanko TJ, San JE, Scott L, Singh L, Magini NA, Smith-Lawrence P, Stevens W, Dor G, Tshiabuila D, Wolter N, Preiser W, Treurnicht FK, Venter M, Chiloane G, McIntyre C, O'Toole A, Ruis C, Peacock TP, Roemer C, Kosakovsky Pond SL, Williamson C, Pybus OG, Bhiman JN, Glass A, Martin DP, Jackson B, Rambaut A, Laguda-Akingba O, Gaseitsiwe S, von Gottberg A, de Oliveira T.

Journal : Nat Med

DOI : 10.1038/s41591-022-01911-2

PMCID : PMC9499863

PMID : 35760080

Authors
Gilbert PB, Huang Y, deCamp AC, Karuna S, Zhang Y, Magaret CA, Giorgi EE, Korber B, Edlefsen PT, Rossenkhan R, Juraska M, Rudnicki E, Kochar N, Huang Y, Carpp LN, Barouch DH, Mkhize NN, Hermanus T, Kgagudi P, Bekker V, Kaldine H, Mapengo RE, Eaton A, Domin E, West C, Feng W, Tang H, Seaton KE, Heptinstall J, Brackett C, Chiong K, Tomaras GD, Andrew P, Mayer BT, Reeves DB, Sobieszczyk ME, Garrett N, Sanchez J, Gay C, Makhema J, Williamson C, Mullins JI, Hural J, Cohen MS, Corey L, Montefiori DC, Morris L.

Journal : Nat Med

DOI : 10.1038/s41591-022-01953-6

PMCID : PMC9499869

PMID : 35995954 PMCID:

Authors
Ussery F, Bachanas P, Alwano MG, Lebelonyane R, Block L, Wirth K, Ussery G, Sento B, Gaolathe T, Kadima E, Abrams W, Segolodi T, Hader S, Lockman S, Moore J.

Journal : J Acquir Immune Defic Syndr.

DOI : 10.1097/QAI.0000000000003017

PMCID : PMC9388617

PMID : 35537094

Authors
Bhebhe L, Moyo S, Gaseitsiwe S, Pretorius-Holme M, Yankinda EK, Manyake K, Kgathi C, Mmalane M, Lebelonyane R, Gaolathe T, Bachanas P, Ussery F, Letebele M, Makhema J, Wirth KE, Lockman S, Essex M, Novitsky V, Ragonnet-Cronin M.

Journal : BMC Infect Dis.

DOI : 10.1186/s12879-022-07698-4

PMCID : PMC9420270

PMID : 36031617

Authors
Toller Erausquin J, Tan RKJ, Uhlich M, Francis JM, Kumar N, Campbell L, Zhang WH, Hlatshwako TG, Kosana P, Shah S, Brenner EM, Remmerie L, Mussa A, Klapilova K, Mark K, Perotta G, Gabster A, Wouters E, Burns S, Hendriks J, Hensel DJ, Shamu S, Marie Strizzi J, Esho T, Morroni C, Eleuteri S, Sahril N, Yun Low W, Plasilova L, Lazdane G, Marks M, Olumide A, Abdelhamed A, López Gómez A, Michielsen K, Moreau C, Tucker JD; International Sexual Health And REproductive Health during COVID-19 Research Consortium.

Journal : Clin Infect Dis.

DOI : 10.1093/cid/ciac102

PMCID : PMC9383436

PMID : 35136960

Authors
Asangbeh-Kerman SL, Davidović M, Taghavi K, Kachingwe J, Rammipi KM, Muzingwani L, Pascoe M, Jousse M, Mulongo M, Mwanahamuntu M, Tapela N, Akintade O, Basu P, Dlamini X, Bohlius J.

Journal : BMC Public Health.

DOI : 10.1186/s12889-022-13827-0

PMCID : PMC9367081

PMID : 35948944

Authors
Resch SC, Foote JHA, Wirth KE, Lasry A, Scott JA, Moore J, Shebl FM, Gaolathe T, Feser MK, Lebelonyane R, Hyle EP, Mmalane MO, Bachanas P, Yu L, Makhema JM, Holme MP, Essex M, Alwano MG, Lockman S, Freedberg KA.

Journal : J Acquir Immune Defic Syndr.

DOI : 10.1097/QAI.0000000000002996

PMCID : PMC9295776

PMID : 35420554

Authors
Hartana CA, Garcia-Broncano P, Rassadkina Y, Lian X, Jiang C, Einkauf KB, Maswabi K, Ajibola G, Moyo S, Mohammed T, Maphorisa C, Makhema J, Yuki Y, Martin M, Bennett K, Jean-Philippe P, Viard M, Hughes MD, Powis KM, Carrington M, Lockman S, Gao C, Yu XG, Kuritzkes DR, Shapiro R, Lichterfeld M.

Journal : Cell Rep.

DOI : 10.1016/j.celrep.2022.111126.

PMCID : PMC9314543

PMID : 35858580

Authors
Maruapula D, Seatla KK, Morerinyane O, Molebatsi K, Giandhari J, de Oliveira T, Musonda RM, Leteane M, Mpoloka SW, Rowley CF, Moyo S, Gaseitsiwe S.

Journal : Medicine (Baltimore)

DOI : 10.1097/MD.0000000000029577

PMID : 35838991

Authors
Maruta T, Shumba E, Ndlovu N, Moyo S, Bangure D, Kebede Y, Noumedem Kenfack JA.

Journal : Front Public Health.

DOI : 10.3389/fpubh.2022.919668

PMCID : PMC9310066

PMID : 35899164

Authors
Mussa A, Powis KM, Lockman S, Ajibola G, Morroni C, Smeaton L, Mmalane M, Makhema J, Shapiro RL. J Pediatr.

Journal : J Pediatr.

DOI : 10.1016/j.jpeds.2022.03.031

PMCID : PMC9233016

PMID : PMID: 35351531